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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9534063_9534464_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9534063 - 9534464
Intron Length:
402

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTGAGTGGA
5'SS Class:
major
3'SS Sequence:
CTCTCACCTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTTGTTTTAACA
Flanking Amino Acid:
APYSGYSGAFQCLKDGKGDV
Intron Amino Acid Position:
215

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.5
1
62.5
38.1
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
76.6
0.6
0.8
69.3
30.3
Minor 5ss
28.8
-2.4
3.1
36.6
41.7
Minor BPS
75.7
0.8
1.2
82.25
33.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015785
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026800
9531698 - 9543767
12070
ENSAPLT00000025306
9524373 - 9600762
76390
ENSAPLT00000047287
9524373 - 9578570
54198
ENSAPLT00000016480
9529694 - 9543683
13990
ENSAPLT00000046092
9524373 - 9543767
19395
ENSAPLT00000044279
9529694 - 9543767
14074