Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9534521_9535705_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9534521 - 9535705

Intron Length:

1185

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGCCTG

5'SS Class:

major

3'SS Sequence:

CCTCTTCCTCTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AACTCAT

U12 Branch Point Sequence:

TTTTGTGGAGAT

Flanking Amino Acid:

VAFVKHTTVQENAPEEKDEY

Intron Amino Acid Position:

234

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.1

0.66

1.1

63.6

48.1

Major BPS

78.3

0.7

0.8

77.7

26.1

Major PPT

77.3

0.61

0.7

69.6

31.2

Minor 5ss

40.1

-1.1

3.4

55.3

48.9

Minor BPS

39.2

-0.7

2.5

65.72

44.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000015785

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025306

9524373 - 9600762

76390

ENSAPLT00000047287

9524373 - 9578570

54198

ENSAPLT00000016480

9529694 - 9543683

13990

ENSAPLT00000046092

9524373 - 9543767

19395

ENSAPLT00000044279

9529694 - 9543767

14074

ENSAPLT00000026800

9531698 - 9543767

12070