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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9537001_9538178_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9537001 - 9538178
Intron Length:
1178

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGGCTT
5'SS Class:
major
3'SS Sequence:
GTTTTCATTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATTTCATCACTA
Flanking Amino Acid:
NTKDCIVKIMKGEADAISLD
Intron Amino Acid Position:
405

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1.1
66.1
45
Major BPS
100
1.24
0.5
100
0
Major PPT
84.1
0.77
0.8
78.2
34.9
Minor 5ss
35.4
-1.7
3.8
52.3
45.9
Minor BPS
48.9
-0
2
67.35
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015785
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025306
9524373 - 9600762
76390
ENSAPLT00000047287
9524373 - 9578570
54198
ENSAPLT00000016480
9529694 - 9543683
13990
ENSAPLT00000046092
9524373 - 9543767
19395
ENSAPLT00000044279
9529694 - 9543767
14074
ENSAPLT00000026800
9531698 - 9543767
12070