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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9538273_9538673_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9538273 - 9538673
Intron Length:
401

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTCCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TTTTATCTAATA
Flanking Amino Acid:
LVPVVGESYEEDSQCSKDEG
Intron Amino Acid Position:
436

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75
35.3
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
85.8
0.8
0.6
84.9
22.8
Minor 5ss
32.5
-2
3.1
33.3
41.7
Minor BPS
60.5
0.33
1.8
76.96
33.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015785
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026800
9531698 - 9543767
12070
ENSAPLT00000025306
9524373 - 9600762
76390
ENSAPLT00000047287
9524373 - 9578570
54198
ENSAPLT00000016480
9529694 - 9543683
13990
ENSAPLT00000046092
9524373 - 9543767
19395
ENSAPLT00000044279
9529694 - 9543767
14074