Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9540666_9541629_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9540666 - 9541629

Intron Length:

964

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTAGGTGGG

5'SS Class:

major

3'SS Sequence:

TTGTACTTCACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATATCAC

U12 Branch Point Sequence:

TTGTACTTCACA

Flanking Amino Acid:

EKYYGYTGALRCLVEQGDVA

Intron Amino Acid Position:

549

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.1

0.57

1.1

58.3

46.6

Major BPS

69.5

0.49

71.8

33.3

Major PPT

78.4

0.64

0.9

72.5

37.4

Minor 5ss

31.2

-2.2

3.4

46.1

Minor BPS

62.2

0.38

76.24

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000015785

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026800

9531698 - 9543767

12070

ENSAPLT00000025306

9524373 - 9600762

76390

ENSAPLT00000047287

9524373 - 9578570

54198

ENSAPLT00000016480

9529694 - 9543683

13990

ENSAPLT00000046092

9524373 - 9543767

19395

ENSAPLT00000044279

9529694 - 9543767

14074