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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9541695_9541959_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9541695 - 9541959
Intron Length:
265

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTGGT
5'SS Class:
major
3'SS Sequence:
ATTCTCTTCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATACAA
U12 Branch Point Sequence:
GATCTCTGAATC
Flanking Amino Acid:
KHSTVGENVDGSNKDDWAKG
Intron Amino Acid Position:
571

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
70.6
39.7
Major BPS
65.8
0.39
1
73.3
31.3
Major PPT
77.8
0.63
0.8
73
31.2
Minor 5ss
40.6
-1
3.2
55
44.5
Minor BPS
56.7
0.19
1.4
62.78
36

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015785
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016480
9529694 - 9543683
13990
ENSAPLT00000046092
9524373 - 9543767
19395
ENSAPLT00000044279
9529694 - 9543767
14074
ENSAPLT00000026800
9531698 - 9543767
12070
ENSAPLT00000025306
9524373 - 9600762
76390
ENSAPLT00000047287
9524373 - 9578570
54198