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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9542145_9542863_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9542145 - 9542863
Intron Length:
719

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TGCCTTATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TACTTTTTACAT
Flanking Amino Acid:
KIRELLEGQEKLFGLHGTEK
Intron Amino Acid Position:
633

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
1.1
77.3
37.8
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
80
0.68
0.9
77.3
35.6
Minor 5ss
30.8
-2.2
3.1
41.8
44.7
Minor BPS
52.9
0.17
1.7
69.32
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015785
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044279
9529694 - 9543767
14074
ENSAPLT00000026800
9531698 - 9543767
12070
ENSAPLT00000016480
9529694 - 9543683
13990
ENSAPLT00000046092
9524373 - 9543767
19395