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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9543051_9543511_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9543051 - 9543511
Intron Length:
461

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATGTA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTGAAT
U12 Branch Point Sequence:
AAGGTCTGAATT
Flanking Amino Acid:
VASLNTCNPSDLLQRALCLH
Intron Amino Acid Position:
695

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
83.9
27.1
Major BPS
62
0.3
1.4
71.9
41
Major PPT
90.4
0.91
0.6
88.5
20.9
Minor 5ss
35.6
-1.6
3.4
49
47.2
Minor BPS
51.5
0.12
1.5
63.8
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015785
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016480
9529694 - 9543683
13990
ENSAPLT00000046092
9524373 - 9543767
19395
ENSAPLT00000044279
9529694 - 9543767
14074
ENSAPLT00000026800
9531698 - 9543767
12070