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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9543523_9543635_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9543523 - 9543635
Intron Length:
113

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGCACC
5'SS Class:
major
3'SS Sequence:
CACTGACCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
GTGCCCTCAGCT
Flanking Amino Acid:
NTCNPSDLLQRALCLHCFLC
Intron Amino Acid Position:
699

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
67.5
37.7
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
62.6
0.28
0.9
53.9
35.3
Minor 5ss
41.3
-1
2.7
52.3
44.6
Minor BPS
52.3
0.15
1.8
71.1
45.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015785
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016480
9529694 - 9543683
13990