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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9546497_9546578_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9546497 - 9546578
Intron Length:
82

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCC|GTGAGTCGC
5'SS Class:
major
3'SS Sequence:
CTGTGCCCCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTGAG
U12 Branch Point Sequence:
GGTGTCTGAGGC
Flanking Amino Acid:
LALLLVALTLLLWRLAQAGR
Intron Amino Acid Position:
113

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.7
0.3
1.3
54.4
44.7
Major BPS
49.8
-0
1.7
51.1
46.3
Major PPT
69
0.43
0.9
62.1
34.8
Minor 5ss
31
-2.2
2.9
40.2
38.9
Minor BPS
41.6
-0.6
1.9
48.24
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016555
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048337
9546160 - 9551003
4844