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Intron Name: Anas_platyrhynchos_platyrhynchos_9_9546869_9548405_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9546869 - 9548405

Intron Length:

1537

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGTGAG

5'SS Class:

strong_major

3'SS Sequence:

CTTCTGTTCCTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTAAC

U12 Branch Point Sequence:

GTGTTGCTAACA

Flanking Amino Acid:

SAVYRVSSDKNANVTLIDLP

Intron Amino Acid Position:

171

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.5

0.96

0.8

77.5

32.9

Major BPS

69.4

0.48

1.1

69.6

35.5

Major PPT

75.9

0.58

0.8

68.7

37.2

Minor 5ss

26.6

-2.7

30.5

43.3

Minor BPS

47.5

-0.1

2.3

64.22

42.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000016555

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000048337

9546160 - 9551003

4844