Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9549540_9550620_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9549540 - 9550620

Intron Length:

1081

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCT|GTAAGTGTG

5'SS Class:

major

3'SS Sequence:

TCTCTCTCTGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTTAAT

U12 Branch Point Sequence:

CGGTTCTTAATC

Flanking Amino Acid:

KLIQQQLEKELNTLRVTRSA

Intron Amino Acid Position:

262

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.7

0.58

1.1

69.5

41.3

Major BPS

0.92

0.9

86.2

29.1

Major PPT

85.8

0.81

0.7

80.7

24.4

Minor 5ss

39.2

-1.2

3.4

59.1

45.3

Minor BPS

67.4

0.53

1.3

66.11

40.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000016555

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000048337

9546160 - 9551003

4844