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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9562671_9562792_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9562671 - 9562792
Intron Length:
122

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCTGTC
5'SS Class:
major
3'SS Sequence:
CTTCTCTTAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
CTTCTCTTAACA
Flanking Amino Acid:
AYYNNDFLRNRYLGLQVGYK
Intron Amino Acid Position:
675

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.2
70.7
40.2
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
80.7
0.69
0.8
76.8
30.4
Minor 5ss
41.7
-0.9
3.4
61.2
43.7
Minor BPS
77.1
0.85
1.2
80.35
35.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016397
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017125
9561926 - 9591190
29265