About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9562914_9563059_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9562914 - 9563059
Intron Length:
146

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
CTCCTCTCCAAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACACAA
U12 Branch Point Sequence:
TCCTCTCCAAAG
Flanking Amino Acid:
GVQFLLMRLLAWLPAPAMFG
Intron Amino Acid Position:
635

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.7
1.01
0.7
84.8
25.1
Major BPS
49.3
-0
0.9
56.6
29.3
Major PPT
65.7
0.35
1
66.2
27.3
Minor 5ss
31.8
-2.1
3.3
42.9
44.7
Minor BPS
44.3
-0.5
2
49.23
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016397
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017125
9561926 - 9591190
29265