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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9563125_9563657_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9563125 - 9563657
Intron Length:
533

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGCAAT
5'SS Class:
major
3'SS Sequence:
TTCTCCCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
CAGCTCTGACCT
Flanking Amino Acid:
SHNPLYMMVLRVVNQEEKSF
Intron Amino Acid Position:
613

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
74.4
37.7
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
83.3
0.75
0.7
77.6
24.3
Minor 5ss
36.1
-1.6
3
49.4
46.6
Minor BPS
46.4
-0.1
1.7
58.88
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016397
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017125
9561926 - 9591190
29265