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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9564640_9566874_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9564640 - 9566874
Intron Length:
2235

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCGCAG
5'SS Class:
major
3'SS Sequence:
TCCTCTTTGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTATTTATTT
Flanking Amino Acid:
TVHIDGIYPSRTSSSQPQVK
Intron Amino Acid Position:
503

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.6
0.37
1.2
53.1
45.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
78.1
0.63
0.9
75.7
32.7
Minor 5ss
41.7
-0.9
3.2
55.3
48.9
Minor BPS
64.4
0.53
1.7
84.57
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016397
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017125
9561926 - 9591190
29265