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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9589231_9591071_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
9589231 - 9591071
Intron Length:
1841

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGCTAT
5'SS Class:
major
3'SS Sequence:
CGCGGGCTCGCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CGCTCAC
U12 Branch Point Sequence:
TTTGCGCTCACG
Flanking Amino Acid:
GTLGKMPHASMVFGAGRDTA
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
77
34.4
Major BPS
57.5
0.19
1.1
60.7
37.6
Major PPT
58.2
0.19
1
49.1
39.3
Minor 5ss
47.9
-0.2
2.9
69
41.9
Minor BPS
42.3
-0.7
2.7
59.58
47.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016397
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017125
9561926 - 9591190
29265