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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9652236_9655116_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9652236 - 9655116
Intron Length:
2881

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTGTT
5'SS Class:
major
3'SS Sequence:
GCTGGCTCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
GTATTTATATTG
Flanking Amino Acid:
DTPNNATPVTSYPTLRIEKN
Intron Amino Acid Position:
252

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
79.3
34.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
66.5
0.37
0.9
61.7
40
Minor 5ss
40.8
-1
3.4
63.8
41.6
Minor BPS
44.7
-0.5
1.8
49.14
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001913
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002060
9627385 - 9666536
39152