About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9663348_9666288_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9663348 - 9666288
Intron Length:
2941

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCAGG
5'SS Class:
strong_major
3'SS Sequence:
ACTTTTGTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
GATTCCTTACAT
Flanking Amino Acid:
LHFSWHAKSKVEYKLGFQVD
Intron Amino Acid Position:
73

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
72.7
44.5
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
82.1
0.72
0.9
76
37.4
Minor 5ss
38.8
-1.3
2.8
48.8
47
Minor BPS
64.9
0.55
1.7
79.66
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001913
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002060
9627385 - 9666536
39152