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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9698724_9698891_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9698724 - 9698891
Intron Length:
168

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACGAG
5'SS Class:
major
3'SS Sequence:
TCTCCTCTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATGAC
U12 Branch Point Sequence:
AAATCCCTAATG
Flanking Amino Acid:
AAEGTSRGSAGKTTADEVPA
Intron Amino Acid Position:
796

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
65.6
40.5
Major BPS
67
0.42
1.1
57.7
39
Major PPT
76
0.58
0.9
72.7
32
Minor 5ss
35
-1.7
3.4
45.9
49.3
Minor BPS
58
0.11
1.7
61.14
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002590
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002613
9698336 - 9704682
6347