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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9699065_9699239_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9699065 - 9699239
Intron Length:
175

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGTCCCA
5'SS Class:
major
3'SS Sequence:
TTCACCTCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
CTCTTCTCAACT
Flanking Amino Acid:
ANHKHQEMENRLKALHAQIL
Intron Amino Acid Position:
738

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.4
0.41
1.2
55.3
43.7
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
78.7
0.65
0.8
69.7
36.6
Minor 5ss
36.8
-1.5
3.2
48.7
46.9
Minor BPS
66.9
0.61
1.6
79.4
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002590
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002613
9698336 - 9704682
6347