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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9699533_9699629_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9699533 - 9699629
Intron Length:
97

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGGGCA
5'SS Class:
major
3'SS Sequence:
TTGTCTGCTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
CTTTTTTTGTCT
Flanking Amino Acid:
QELKMLRAQQRQAGAAGGGT
Intron Amino Acid Position:
641

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1
62.8
37.7
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
79.9
0.67
0.9
77.5
36.9
Minor 5ss
22.7
-3.1
3.4
29.2
43.6
Minor BPS
46
-0.2
3.4
77.64
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002590
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002613
9698336 - 9704682
6347