Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9701150_9701979_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9701150 - 9701979

Intron Length:

830

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGCCGG

5'SS Class:

strong_major

3'SS Sequence:

TCCTCCTCCCCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATCTCAC

U12 Branch Point Sequence:

AATATCTCACCC

Flanking Amino Acid:

CTEKAGRIQKLETEIQRISE

Intron Amino Acid Position:

463

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.73

59.7

46.7

Major BPS

76.2

0.65

0.9

77.4

26.5

Major PPT

76.9

0.6

0.7

68.8

31.6

Minor 5ss

31.8

-2.1

38.6

46.5

Minor BPS

47.7

-0.1

1.8

58.86

39.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000002590

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002613

9698336 - 9704682

6347