Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9702212_9703528_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9702212 - 9703528

Intron Length:

1317

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAACCCAC

5'SS Class:

major

3'SS Sequence:

TCCTTCCTCCCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCAGCAT

U12 Branch Point Sequence:

AGCCCCTCAGCA

Flanking Amino Acid:

DGPGFQHPEVSRLMPSPVPA

Intron Amino Acid Position:

385

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.3

0.57

1.2

63.2

43.4

Major BPS

50.7

0.02

1.5

44.2

Major PPT

80.4

0.68

0.7

72.6

32.2

Minor 5ss

43.7

-0.7

2.9

59.1

45.6

Minor BPS

-0.1

1.8

56.85

41.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000002590

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002613

9698336 - 9704682

6347