Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9719915_9721327_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9719915 - 9721327

Intron Length:

1413

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATTGCAC

5'SS Class:

major

3'SS Sequence:

CTTTGTTTTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTTAC

U12 Branch Point Sequence:

GTGTTCTTACAC

Flanking Amino Acid:

DQTRPKKQKTGCATSEPTEK

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.9

0.47

1.1

58.5

40.4

Major BPS

81.5

0.78

0.9

71.6

36.1

Major PPT

85.8

0.8

0.7

84.6

30.3

Minor 5ss

37.2

-1.4

3.3

50.1

46.5

Minor BPS

54.3

0.11

1.7

63.77

41.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000003136

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003189

9716881 - 9736992

20112