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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9725263_9727143_F

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
9725263 - 9727143
Intron Length:
1881

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAATTATA
5'SS Class:
major
3'SS Sequence:
GCTGCACCAAAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTCTGCTGCACC
Flanking Amino Acid:
RSISQPTSFCNVQAYSKEPV
Intron Amino Acid Position:
239

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
82.7
29.3
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
49.2
-0
1.1
46.4
34.7
Minor 5ss
41.1
-1
2.8
51.7
39
Minor BPS
48
-0.1
2.3
66.78
44.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003136
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003189
9716881 - 9736992
20112