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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9728296_9729942_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9728296 - 9729942
Intron Length:
1647

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGTCA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
ACTGATACAACC
Flanking Amino Acid:
THWSPRSDIIRYYTPAENSH
Intron Amino Acid Position:
291

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
71.7
34.2
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
86.2
0.81
0.7
80.7
24.5
Minor 5ss
36.4
-1.5
3.3
47.9
47.8
Minor BPS
41.8
-0.6
1.9
50.71
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003136
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003189
9716881 - 9736992
20112