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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9730007_9730695_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9730007 - 9730695
Intron Length:
689

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGCTTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCCTGAC
U12 Branch Point Sequence:
TTTTTTCTAACA
Flanking Amino Acid:
GRPVKQASSGRQCGAEISEE
Intron Amino Acid Position:
313

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.72
1
69.7
43.7
Major BPS
51.1
0.03
1.2
45
39.9
Major PPT
88.1
0.86
0.8
85.4
27.8
Minor 5ss
47
-0.3
2.8
56.3
47.9
Minor BPS
70.7
0.64
1.6
83.44
30.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003136
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003189
9716881 - 9736992
20112