About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9730846_9732277_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9730846 - 9732277
Intron Length:
1432

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACTTTTC
5'SS Class:
major
3'SS Sequence:
CTGCTCATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAC
U12 Branch Point Sequence:
TCCCATTTAACT
Flanking Amino Acid:
RVEHFSPLTEAMEREVTAAF
Intron Amino Acid Position:
363

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
75.3
35.6
Major BPS
80.9
0.77
0.8
81.7
25.4
Major PPT
77.2
0.61
0.9
73.8
35.4
Minor 5ss
43.8
-0.7
3
61.8
43
Minor BPS
62.1
0.46
1.5
73.99
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003136
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003189
9716881 - 9736992
20112