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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9732410_9732815_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9732410 - 9732815
Intron Length:
406

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAACTA
5'SS Class:
strong_major
3'SS Sequence:
CTTTATCATATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TATTCTTTATCA
Flanking Amino Acid:
LKNLHWLNDEIINFYMNLLV
Intron Amino Acid Position:
407

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
74.1
36.4
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
75
0.56
0.9
69.9
35.4
Minor 5ss
34.9
-1.7
3.3
47.7
47.7
Minor BPS
72.6
0.71
1.5
80.45
35.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003136
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003189
9716881 - 9736992
20112