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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9733241_9734761_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9733241 - 9734761
Intron Length:
1521

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTAAGTAAC
5'SS Class:
major
3'SS Sequence:
TTGTTTCAAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAA
U12 Branch Point Sequence:
TTTGTTTCAAAC
Flanking Amino Acid:
QKGDKICETLFRYLQEESQE
Intron Amino Acid Position:
501

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
76.1
32.7
Major BPS
73
0.57
1.2
77.7
37.1
Major PPT
73.9
0.54
1
70.8
39
Minor 5ss
38.6
-1.3
2.8
51.7
39.2
Minor BPS
52.4
0.05
1.7
67.06
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003136
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003189
9716881 - 9736992
20112