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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9735649_9736278_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9735649 - 9736278
Intron Length:
630

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTGTATTTAATG
Flanking Amino Acid:
SRDKPMTFTQNHMPYFRRKM
Intron Amino Acid Position:
562

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.8
79.3
31.1
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
97.2
1.06
0.5
96.4
12.2
Minor 5ss
33.2
-1.9
2.8
39
46.4
Minor BPS
65.1
0.33
1.5
67.86
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003136
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003189
9716881 - 9736992
20112