Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9745588_9745807_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9745588 - 9745807

Intron Length:

220

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATC|GTAAGTGCA

5'SS Class:

major

3'SS Sequence:

TCCCCTGTTTTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCTTGAG

U12 Branch Point Sequence:

TGGGCCTTGAGG

Flanking Amino Acid:

IMQKEADETKSAEEIPLKIL

Intron Amino Acid Position:

231

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.9

0.49

1.3

67.7

37.6

Major BPS

-0

1.6

48.7

45.1

Major PPT

74.3

0.55

0.8

72.3

32.4

Minor 5ss

34.5

-1.8

3.1

42.2

38.9

Minor BPS

49.8

-0.1

1.9

54.87

46.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000003217

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044601

9741060 - 9754607

13548

ENSAPLT00000003334

9741060 - 9754607

13548