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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9751130_9752018_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
9751130 - 9752018
Intron Length:
889

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TGG|GCCACCCCA
5'SS Class:
weak_major
3'SS Sequence:
GCTTCTCCCTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTAAC
U12 Branch Point Sequence:
TGCCCCCTAACG
Flanking Amino Acid:
TLPSLPLQRLVNTDTETAVV
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
53.9
0.09
1.4
47.4
42.3
Major BPS
59.7
0.24
1.1
61.2
32.6
Major PPT
76.4
0.59
0.8
73.4
31.6
Minor 5ss
28.3
-2.5
3.8
32
42
Minor BPS
57.1
0.09
1.8
62.79
44.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003217
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044601
9741060 - 9754607
13548