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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9751603_9752061_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9751603 - 9752061
Intron Length:
459

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
GCTCTCTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTCAC
U12 Branch Point Sequence:
CCTGCCTCACCT
Flanking Amino Acid:
RNIPPHLQWEVLDGLLAQYG
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.9
76.2
39.9
Major BPS
54.7
0.12
1.2
59.2
39.1
Major PPT
74.1
0.54
0.8
65.3
36.2
Minor 5ss
39.7
-1.2
2.9
52.1
44.7
Minor BPS
49.1
0.01
2
67.41
49.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003217
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003334
9741060 - 9754607
13548