Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9778460_9779228_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9778460 - 9779228

Intron Length:

769

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTACGTACC

5'SS Class:

major

3'SS Sequence:

CTCTCTCTTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTATTCTGATCT

Flanking Amino Acid:

STRRRHIGNRANPDPNCCLG

Intron Amino Acid Position:

112

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.3

0.64

1.1

69.9

40.9

Major BPS

96.5

1.15

0.6

34.2

Major PPT

82.2

0.72

0.7

80.7

24.5

Minor 5ss

35.5

-1.6

2.8

38.3

39.6

Minor BPS

62.2

0.46

1.7

81.57

39.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000003904

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027160

9769666 - 9790819

21154

ENSAPLT00000004031

9769666 - 9790819

21154