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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9779392_9781289_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9779392 - 9781289
Intron Length:
1898

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTGAGATCT
5'SS Class:
major
3'SS Sequence:
TTTTTTTCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TACTTTTTATTT
Flanking Amino Acid:
SPNWLSPEITLSRSRRSSRR
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.2
0.43
1
65.9
33.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
92.5
0.96
0.6
92.6
17.3
Minor 5ss
37.7
-1.4
3.2
54.8
43.3
Minor BPS
58.6
0.35
1.5
71.82
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003904
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027160
9769666 - 9790819
21154