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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9779392_9783302_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9779392 - 9783302
Intron Length:
3911

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TACTTTTTATTT
Flanking Amino Acid:
RSKSRSRSESRSRSRRSSRR
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.9
1.04
0.7
89.2
17.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
92.5
0.96
0.6
92.6
17.3
Minor 5ss
38.3
-1.3
2.9
49
47.2
Minor BPS
58.6
0.35
1.5
71.82
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003904
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004031
9769666 - 9790819
21154