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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9781356_9783302_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9781356 - 9783302
Intron Length:
1947

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
ATTCTATTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTGAT
U12 Branch Point Sequence:
ATATACTTGATT
Flanking Amino Acid:
RSKSRSRSESSAITHLDVIT
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.9
1.04
0.7
89.2
17.6
Major BPS
75
0.62
1
65.3
41.5
Major PPT
84.7
0.78
0.8
81.9
34.1
Minor 5ss
38.3
-1.3
2.9
49
47.2
Minor BPS
66.2
0.59
1.5
79.24
36.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003904
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027160
9769666 - 9790819
21154