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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9801394_9801487_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9801394 - 9801487
Intron Length:
94

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGCCAA
5'SS Class:
major
3'SS Sequence:
CGTCCCCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCCCAT
U12 Branch Point Sequence:
GCGAGGTGACCA
Flanking Amino Acid:
SEKLQEVYRKGRVFANSADS
Intron Amino Acid Position:
718

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1
61.1
41.3
Major BPS
59.7
0.24
1.3
68.6
38.9
Major PPT
68.2
0.41
0.8
58.1
33.1
Minor 5ss
31.3
-2.1
3
30.1
43
Minor BPS
32.7
-1.3
2.3
37.02
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004349
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017422
9800042 - 9805888
5847
ENSAPLT00000004540
9800042 - 9806543
6502
ENSAPLT00000042720
9800042 - 9806015
5974