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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9802239_9802323_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9802239 - 9802323
Intron Length:
85

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
TGTCCCGGCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTGAC
U12 Branch Point Sequence:
CCGTCCCAAATT
Flanking Amino Acid:
SDTAVNAAMESCDRIKQSAS
Intron Amino Acid Position:
572

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
67.9
37.4
Major BPS
71.3
0.53
1.2
63.1
44.5
Major PPT
63.4
0.3
1
57.4
38.5
Minor 5ss
24.1
-3
3.3
32
42.8
Minor BPS
47.9
-0
2
63.71
47.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004349
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042720
9800042 - 9806015
5974
ENSAPLT00000017422
9800042 - 9805888
5847
ENSAPLT00000004540
9800042 - 9806543
6502