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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9802735_9802823_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9802735 - 9802823
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TTCCCCTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
TGGTCCTCACCC
Flanking Amino Acid:
GRGGSMLGTKRTLPKTCMEK
Intron Amino Acid Position:
491

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.9
76.5
39.2
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
82.4
0.73
0.7
76.9
25.1
Minor 5ss
34.9
-1.7
3.3
50
46.3
Minor BPS
56
0.17
1.9
67.46
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004349
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042720
9800042 - 9806015
5974
ENSAPLT00000017422
9800042 - 9805888
5847
ENSAPLT00000004540
9800042 - 9806543
6502