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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9803743_9804120_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9803743 - 9804120
Intron Length:
378

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGGGTCCT
5'SS Class:
major
3'SS Sequence:
AAACCCTTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCAAAA
U12 Branch Point Sequence:
TGCCCCAAAACC
Flanking Amino Acid:
GTPSAFDRVLSSKMGMEAVM
Intron Amino Acid Position:
334

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1
64.1
41.7
Major BPS
47.3
-0.1
1
50.8
30.3
Major PPT
71.2
0.48
0.9
66.4
39.5
Minor 5ss
30.2
-2.3
3.2
38.5
40.7
Minor BPS
48.5
-0.1
2
61.86
43.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004349
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042720
9800042 - 9806015
5974
ENSAPLT00000017422
9800042 - 9805888
5847
ENSAPLT00000004540
9800042 - 9806543
6502