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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9804634_9804719_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9804634 - 9804719
Intron Length:
86

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGGAGC
5'SS Class:
major
3'SS Sequence:
CCGCTCCCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGGGAC
U12 Branch Point Sequence:
CGGGTGCCAACG
Flanking Amino Acid:
FVLEVMGRHCGYLALVSGLA
Intron Amino Acid Position:
234

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
63.9
42.4
Major BPS
48.6
-0
1.5
48.8
46.3
Major PPT
69
0.43
0.8
65.3
30.5
Minor 5ss
26.7
-2.7
2.9
25.7
36.9
Minor BPS
33
-1.4
2.2
31.94
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004349
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042720
9800042 - 9806015
5974
ENSAPLT00000017422
9800042 - 9805888
5847
ENSAPLT00000004540
9800042 - 9806543
6502