Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9805048_9805151_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

9805048 - 9805151

Intron Length:

104

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTGCGTGGG

5'SS Class:

major

3'SS Sequence:

ATCGGGGGAGCAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

AGCTCAA

U12 Branch Point Sequence:

GGAGCTCAAAGC

Flanking Amino Acid:

GGLLDELLRDGQISEEVAKA

Intron Amino Acid Position:

164

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.47

1.1

54.6

44.5

Major BPS

61.8

0.29

1.1

63.4

35.6

Major PPT

48.6

-0

1.1

39.4

43.1

Minor 5ss

26.1

-2.8

3.2

31.1

42.9

Minor BPS

37.2

-0.9

40.93

38.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000004349

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042720

9800042 - 9806015

5974

ENSAPLT00000017422

9800042 - 9805888

5847

ENSAPLT00000004540

9800042 - 9806543

6502