About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9805708_9806395_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9805708 - 9806395
Intron Length:
688

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGGGAG
5'SS Class:
major
3'SS Sequence:
CTCCTCTCGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCACAT
U12 Branch Point Sequence:
GCTGTCACATCT
Flanking Amino Acid:
AVLTSGGDAQGMNAAVRAVT
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1
60
40.8
Major BPS
59.9
0.25
1.2
69
38.9
Major PPT
72.1
0.5
0.9
68.7
31.7
Minor 5ss
21.7
-3.3
3.4
27.2
44.5
Minor BPS
41.3
-0.5
2
57.23
45.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004349
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004540
9800042 - 9806543
6502