Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9814394_9818433_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9814394 - 9818433

Intron Length:

4040

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGTGTC

5'SS Class:

strong_major

3'SS Sequence:

GTTTCTTTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CAGTAAC

U12 Branch Point Sequence:

TGTGCAGTAACG

Flanking Amino Acid:

KEQLTNEQREGLKQLLKQGS

Intron Amino Acid Position:

341

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

92.7

1.01

0.7

84.8

25.1

Major BPS

54.4

0.11

1.2

36.4

Major PPT

89.4

0.89

0.7

84.5

30.4

Minor 5ss

31.8

-2.1

3.3

42.9

44.7

Minor BPS

47.3

-0.3

2.4

61.23

46.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000005283

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005491

9814329 - 9826930

12602