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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9818594_9818998_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9818594 - 9818998
Intron Length:
405

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTGTCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
TAGCTATGAACT
Flanking Amino Acid:
MDITHLDGHKVHVARDKITK
Intron Amino Acid Position:
288

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.8
80
29.3
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
81
0.7
0.8
73.6
37
Minor 5ss
26.1
-2.7
2.9
29.9
43.2
Minor BPS
49.9
0.07
1.7
68.87
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005283
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005491
9814329 - 9826930
12602