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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9819111_9819677_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9819111 - 9819677
Intron Length:
567

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
GTCTCTTTATTT
Flanking Amino Acid:
GDLRFRIKVLKHPVFERRGD
Intron Amino Acid Position:
250

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
0.9
73.6
37.1
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
84.9
0.79
0.8
80.3
31.7
Minor 5ss
34.7
-1.7
3.2
43.8
38
Minor BPS
63.5
0.5
1.6
76.04
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005283
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005491
9814329 - 9826930
12602