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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_9829516_9830290_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9829516 - 9830290
Intron Length:
775

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATCTGCA
5'SS Class:
major
3'SS Sequence:
CTTTATTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTCCTTCATT
Flanking Amino Acid:
SGKKLAWAQQVEGTTRRAKI
Intron Amino Acid Position:
343

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1.2
67.7
37.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
89.2
0.88
0.7
84.2
30.3
Minor 5ss
44.6
-0.6
2.9
59.3
45.3
Minor BPS
79.8
1.02
1.6
95.75
31

Associated Gene:

Gene:
TBCCD1
Ensembl Gene ID:
ENSAPLG00000005621
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035757
9827012 - 9835469
8458
ENSAPLT00000026746
9826194 - 9831513
5320
ENSAPLT00000005811
9826194 - 9834361
8168